Metagenomic Systems Biology: Integrative Analysis of the Microbiome, Singh Shailza

Автор: Frans J. de Bruijn
Название: Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches
ISBN: 0470644796 ISBN-13(EAN): 9780470644799
Издательство: Wiley
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Цена: 301960.00 T
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Описание: Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches is the first comprehensive reference covering the various metagenomics in a large variety of habitats, which could not previously have been analysed without metagenomic methodology.

Автор: Frans J. de Bruijn Frans J. de Bruijn
Название: Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats
ISBN: 0470647191 ISBN-13(EAN): 9780470647196
Издательство: Wiley
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Цена: 276800.00 T
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Описание: Metagenomics has revolutionized microbiology and many associated health and environmental fields. This is the first comprehensive treatise covering the various omics in a large variety of habitats, which could not previously have been analysed without metagenomic methodology.

Автор: Xia Yinglin, Sun Jun, Chen Ding-Geng
Название: Statistical Analysis of Microbiome Data with R
ISBN: 9811315337 ISBN-13(EAN): 9789811315336
Издательство: Springer
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Цена: 139750.00 T
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Описание: Chapter 1: Introduction to R, RStudio and ggplot2 1.1 Introduction to R 1.2 Introduction to RStudio 1.3 Introduction to ggplot2 1.4 Introduction to R Packages for Microbiome Data
Chapter 2: What are Microbiome Data?2.1 Phylogenetics--The Basics 2.2 What Microbiome Data Look Like? 2.2.1 Basic Data Structure and Format of Microbiome Data 2.2.2 OUT Table2.2 3 Response Variables and Covariates2.3 Some Specific Features of Microbiome Data
Chapter 3: Bioinformatic and Statistical Analyses of Microbiome Data 3.1 Overview of Bioinformatic Analysis 3.1.1 Taxonomic Diversity: from the 16S-based Approach 3.1.2 Taxonomic Profiling of Shotgun Metagenomes3.1.3 Introduction to Bioinformatic toolso QIIME o Mothuro 16S rRNA Gene Sequence Data Analysis using QIIME and Mothuro Other Biostatistics Tools3.2 Statistical Analysis of Microbiome Community Composition 3.2.1 Alpha Diversity Analysis and Statistical Measurements 3.2.2 Beta Diversity Analysis and Statistical Measurements3.3 Multivariate Statistical Techniques 3.3.1Data Visualization: Principal Component and Principal Coordinates Analyses 3.3.2 Classification and Clustering with Visualization 3.4 Hypothesis Testing and Statistical Modeling 3.4.1 Statistical Testing of Microbiome Community 3.4.2 Multivariate Statistical Methods and Modeling of Microbiome Community and Environmental Covariates3.4.3 Mediational and Longitudinal Microbiome Data Analysis3.4.4 Host Interactions and Interventions3.4.5 Mediation Analysis and Longitudinal Analysis 3.5 Multiple Comparisons and Testing Correlation 3.6 Correlation Analysis of Microbiome Community and Environmental Covariates
Chapter 4: Power and Sample Size Calculation in Hypothesis Testing Microbiome Data4.1 Statistical Hypothesis Testing and Power Analysis 4.1.1 Hypothesis Testing 4.1.2 Power Analysis and Sample Size Calculation4.2 Comparing Diversity or a Taxon of Interest between Two Groups 4.2.1 Hypotheses and Basic Power and Sample Size Formulas4.2.2 Diversity Data for Vitamin D and Vitamin D Receptor Study4.2.3 Theory of Power for a Test for Comparing Proportions4.2.4 Power of Fisher's Exact Test for Comparing Proportions4.2.5 R Function power.t.test4.3 Comparing Diversity across More than Two Groups 4.3.1 Hypotheses and Theory of Power for One-Way ANOVA4.3.2 Examples4.3.2 R Function pwr.avova.test4.4 Comparing the Frequency of all Taxa across Groups4.4.1 Hypotheses Testing and Power and Sample Size Calculations for Comparing all Taxa4.4.2 Dirichlet-multinomial model in Power and Sample Size Analyses4.4.3 Power and Size Calculations using HMP Package4.5 Power and Sample Size Estimation using Pairwise Distances and PERMANOVA 4.5.1 PERMANOVA and Estimation of PERMANOVA Power 4.5.2 Examples using micropower Package4.6 Power Calculations using ANOSIM Package
Chapter 5: Microbiome Data Management5.1 Data Importing and Merging datasets or components 5.1.1 Importing the Output from QIIME 5.1.2 Importing the Output from mothur&

Автор: Neu, Josef
Название: The Microbiome In Prenatal And Neonatal Life
ISBN: 0128205903 ISBN-13(EAN): 9780128205907
Издательство: Elsevier Science
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Цена: 129130.00 T
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Описание:

We are changing our concept that the newborn infant emerges from a sterile environment. In-utero colonization may have major impacts on the developing mammal in terms of development of immunity and metabolism that, with epigenetic modifications, will lead to diseases in later life. In addition, the microbial profile that develops during and after birth depends on mode of delivery, type of feeding (human milk versus formula) and various other environmental factors to which the newborn is exposed. The Microbiome in Prenatal and Neonatal Life clarifies that the microbiome in the maternal fetal unit as well as the immediate changes that occur as new microbes are acquired postnatally play major roles in subsequent health and disease. Rapidly developing technologies for multi-omic analyses and systems biology are shifting paradigms in both scientific knowledge and clinical care.

Автор: Victor Pylro; Luiz Roesch
Название: The Brazilian Microbiome
ISBN: 331959995X ISBN-13(EAN): 9783319599953
Издательство: Springer
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Цена: 130430.00 T
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Описание: Brazilian Microbiome: Current status and perspectives unites a set of distinguished investigators conducting microbiome research and builds a comprehensive reference book with up-to-date information regarding the Brazilian microbiome studies and trends.

Автор: Belibasakis Georgios N., Hajishengallis George, Bostanci Nagihan
Название: Oral Mucosal Immunity and Microbiome
ISBN: 303028526X ISBN-13(EAN): 9783030285265
Издательство: Springer
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Цена: 186330.00 T
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Описание: The first International Conference on Oral Mucosal Immunity and Microbiome (OMIM) aimed to highlight cutting-edge basic and translational research from an oral immunological and microbiological perspective. Oral diseases with a microbial etiology are the most prevalent chronic diseases of humans. Whilst not life-threatening, they can significantly compromise quality of life, are associated with increased risk for certain systemic diseases, and pose heavy financial burdens to national health systems. Hence, periodontal and peri-implant diseases, dental caries, root canal infections and mucosal infections are significant global public health problems. In this book global experts summarize and discuss the latest progress made in oral mucosal immunity and the oral microbiome. Target audience is basic and/or translational researchers with expertise in host immunity and microbiome research, and interest in oral health and disease. This volume provides a much needed quantum leap in the field, by joining forces to address gaps at the oral mucosal immunity-microbiome cross-talk.

Автор: Kumar Vivek, Prasad Ram, Kumar Manoj
Название: Microbiome in Plant Health and Disease: Challenges and Opportunities
ISBN: 9811384975 ISBN-13(EAN): 9789811384974
Издательство: Springer
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Цена: 139750.00 T
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Описание: The book discusses the complex interactions between plants and their associated microbial communities. It also elucidates the ways in which these microbiomes are connected with the plant system, and how they affect plant health. The different chapters describe how microbiomes affect plants with regard to immunity, disease conditions, stress management and productivity. In addition, the book describes how an ‘additional plant genome’ functions as a whole organ system of the host, and how it presents both challenges and opportunities for the plant system. Moreover, the book includes a dedicated section on using omics tools to understand these interactions, and on exploiting them to their full potential.

Автор: Flint Harry J.
Название: Why Gut Microbes Matter: Understanding Our Microbiome
ISBN: 3030432459 ISBN-13(EAN): 9783030432454
Издательство: Springer
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Цена: 83850.00 T
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Описание: Given the at times confusing new information concerning the human microbiome released over the last few years, this book seeks to put the research field into perspective for non-specialists.

Автор: Douglas Angela E.
Название: Fundamentals of Microbiome Science: How Microbes Shape Animal Biology
ISBN: 0691217718 ISBN-13(EAN): 9780691217710
Издательство: Wiley
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Цена: 29570.00 T
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Описание:

An essential introduction to microbiome science, a new cutting-edge discipline that is transforming the life sciences

This book provides an accessible and authoritative guide to the fundamental principles of microbiome science, an exciting and fast-emerging new discipline that is reshaping many aspects of the life sciences. Resident microbes in healthy animals--including humans-can dictate many traits of the animal host. This animal microbiome is a second immune system conferring protection against pathogens; it can structure host metabolism in animals as diverse as reef corals and hibernating mammals; and it may influence animal behavior, from social recognition to emotional states. These microbial partners can also drive ecologically important traits, from thermal tolerance to diet, and have contributed to animal diversification over long evolutionary timescales.

Drawing on concepts and data across a broad range of disciplines and systems, Angela Douglas provides a conceptual framework for understanding these animal-microbe interactions while shedding critical light on the scientific challenges that lie ahead. Douglas explains why microbiome science demands creative and interdisciplinary thinking-the capacity to combine microbiology with animal physiology, ecological theory with immunology, and evolutionary perspectives with metabolic science.

An essential introduction to a cutting-edge field that is revolutionizing the life sciences, this book explains why microbiome science presents a more complete picture of the biology of humans and other animals, and how it can deliver novel therapies for many medical conditions and new strategies for pest control.

Автор: Victor Pylro; Luiz Roesch
Название: The Brazilian Microbiome
ISBN: 3319867555 ISBN-13(EAN): 9783319867557
Издательство: Springer
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Цена: 93160.00 T
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Описание: Brazilian Microbiome: Current status and perspectives unites a set of distinguished investigators conducting microbiome research and builds a comprehensive reference book with up-to-date information regarding the Brazilian microbiome studies and trends.

Автор: Varma Ajit, Tripathi Swati, Prasad Ram
Название: Plant Microbiome Paradigm
ISBN: 3030503941 ISBN-13(EAN): 9783030503949
Издательство: Springer
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Цена: 139750.00 T
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Описание:

1. Trichoderma: Advances in Biological Control for Sustainable Soil Ecosystem

11. Beneficial Soil Microbes and their Interaction to P

Автор: Ravindra Pal Singh; Ramesh Kothari; Prakash G. Kor
Название: Understanding Host-Microbiome Interactions - An Omics Approach
ISBN: 9811353042 ISBN-13(EAN): 9789811353048
Издательство: Springer
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Цена: 186330.00 T
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Описание: This book offers up-to-date information on different microbiomes, their community composition and interactive functions with the host, bringing together information from diverse research reports to provide an overview of the rapid developments in meta-omics technologies. It is a valuable resource for scientists, researchers, postgraduate and graduate students interested in understanding the impact and importance of next generation sequencing technologies on different hosts and their microbiomes.